Segmentation+ Workroom Tutorial
How-to

Segmentation+ Workroom Tutorial

Demo

2 May 2024 - Discover the Segmentation+ workroom, a powerful tool for interactive 3D image segmentation. This tutorial offers a comprehensive overview of the segmentation process, covering essential principles and tools.  Learn more

Visualize Identified Molecules of a Cryo-Tomogram
Add-on How-to

Visualize Identified Molecules of a Cryo-Tomogram

Python (pyscro), Project (hx, pgo)

4 Dec 2023 - This Xtra provides the means to import results from template matching and visualize them with the Molecule Cloud View module. In addition, a module is provided to crop point clouds according to an ROI-box.  Learn more

Eval on Spatial Graph
Add-on

Eval on Spatial Graph

XPand module

8 Sep 2022 - This Xtra provides a module that evaluates a scalar field at each point of a Spatial Graph and stores the result as the thickness attribute of the resulting Spatial Graph.  Learn more

Extract Objects
Add-on

Extract Objects

XPand module

1 Sep 2022 - The Xtra module extracts single objects based on label information listed in a Label Analysis.  Learn more

Reconstruct Spatial Graph from Markers
Add-on

Reconstruct Spatial Graph from Markers

XPand module

1 Sep 2022 - This Xtra filters a Spatial Graph to keep only segments that have at least one point in each of the labels of an input Label Field.  Learn more

Plane Tools - Surface and Volume Distance to Plane and Spatial Graph Projection onto Plane
Add-on

Plane Tools - Surface and Volume Distance to Plane and Spatial Graph Projection onto Plane

XPand module

26 Jul 2022 - This Xtra provides a set of three modules to compute distance and projection to a user-defined plane.  Learn more

Split and Merge Segments
Add-on How-to

Split and Merge Segments

XPand module

29 Jun 2021 - The Split and Merge Segments module merges the two most representative segments at the intersection points of a graph structure and detaches the others.  Learn more

Efficient Graph-based 2D Image Segmentation
Add-on

Efficient Graph-based 2D Image Segmentation

XPand module

12 Feb 2021 - This Xtra implements efficient graph-based image segmentation by Felzenszwalb and Huttenlocher.  Learn more

Refine Surface
Add-on

Refine Surface

XPand module

16 Oct 2019 - This module refines a surface.  Learn more