Tcl
8 Mar 2021 - This Xtra contains a script module to fit molecular models to density maps, a process frequently called "docking". Learn more
Image Segmentation Evaluation Using Standard Metrics
Python (pyscro), Project (hx, pgo)
8 Mar 2021 - Segmentation evaluation using standard precision, and recall metrics for comparing two segmentation labels. Learn more
Getting Started with Flatten Module
Project (hx, pgo), Demo
8 Mar 2021 - This tutorial demonstrates use of the Flatten experimental module to create interactive contours by defining the unfolding surface while respecting the constraints of the module inputs. Learn more
Demo, Misc
24 Feb 2021 - This video tutorial demonstrates how to deal with visualization of large datasets. Learn more
Patch Extraction Tools for Deep Learning Data Preparation
Python (pyscro)
22 Feb 2021 - A set of tools dedicated to the preparation of data for training Deep Learning models and reducing annotation time. Learn more
How to Set Up Two-Sided Clipping
Demo
15 Feb 2021 - This tutorial explains how to set up two-sided clipping in order to transition between two visualizations of data. Learn more
How to Use Camera Orbit and Animate a Rotation
Demo
15 Feb 2021 - This tutorial explains how to use the Camera Orbit module, and then animate the rotation around an object in the Animation Director. Learn more
Efficient Graph-based 2D Image Segmentation
XPand module
12 Feb 2021 - This Xtra implements efficient graph-based image segmentation by Felzenszwalb and Huttenlocher. Learn more
Demo
10 Feb 2021 - This tutorial explains how to create and export a movie file from the Animation Director. Learn more
How to Compare Slices Side by Side
Demo
10 Feb 2021 - This tutorial explains how to perform a side-by-side comparison of two slices that display different information; for example, of raw data and its corresponding labeled image. Learn more
Python (pyscro)
22 Jan 2021 - This Python script-object allows you to convert a point-cloud object to a spreadsheet object. Learn more
Non-Standard Python Package Installation Tutorial
Demo, Misc
13 Jan 2021 - This Xtra provides a brief video that explains how to install a Python package in a newly created Python environment using pip or edm. Learn more
FIBSEM Mitochondria Segmentation
Deep learning model
12 Jan 2021 - Pre-trained model for the Deep Learning Prediction module detecting mitochondria in a Focused Ion Beam Scanning Electron Microscope (FIBSEM) data set. Learn more
Python (pyscro), Data
4 Jan 2021 - This module performs an adaptive global thresholding of the input image by computing a deviation from the mean of its grayscale values. Learn more
How to Create and Animate a Camera Path
Demo
3 Jan 2021 - This tutorial explains how to create a camera path, and then animate the camera along this path with the Animation Director. Learn more
How to Animate the Appearance of Objects with the Animation Director
Demo
3 Jan 2021 - This tutorial explains how to animate the appearance and disappearance of objects with the Animation Director. Learn more
How to Get Started with the Animation Director
Demo
3 Jan 2021 - This tutorial demonstrates the basic techniques of animation creation with the Animation Director. Learn more
Tcl
17 Nov 2020 - This module creates a spreadsheet that contains the measurement and annotation data (generated with the Measurement tool) that can be used for further analysis. Learn more
Recipe ISP, IVP, A2D
17 Nov 2020 - A recipe for applying a Marker Based Watershed (as in the Segmentation Editor) from the Project View. Learn more
Automatic Extraction of Transparent Surface Cross Section
Python (pyscro), Project (hx, pgo)
20 Oct 2020 - A module for creating partially transparent capping surfaces. Learn more
Auto Threshold for Multi-Thresholding
Tcl
19 Oct 2020 - The combination of Auto Thresholding and Multi-Thresholding makes it easy to create precise surfaces without additional smoothing, using the Generate Surface's smoothing option "Existing Weights". Learn more