FIB-ToFSIMS
ToFSIMS collection of visualization modules for AutoSlice&View ToFSIMS imaging workflow and ToFWerk HDF5 data,
Time-of-flight secondary ion mass spectrometry (ToF-SIMS) employs a trusted spectroscopic technique which collects and separates isotopes according to their mass-to-charge ratio (m/z).
ASVToFSIMViz module reads back specific element(s) defined by atomic mass from a set of HDF5 files produced by an AutoSlice&View ToF-SIMS workflow.
ToFSIMSViz module reads back specific element(s) defined by atomic mass from the HDF5 file produced by TOFWERK ToF-SIMS detector.
ToFSIMSFindPeaks module finds most prominent elements in the Peak Data table
ToFSIMSVizRemovePeakData removes possibly corrupted PeakData dataset from a list of HDF5 files from the AutoSlice&View TofSIMS workflow.
ToFSIMSVizCreateFIBPeakData module creates the PeakData dataset if missing from the HDF5 file in the AutoSlice&View ToFSIMS workflow.
DisplayPeriodicTable module displays the periodic table of elements with their atomic mass. Clicking an element will add the atomic mass of the element, rounded to nearest integer, to the list of atomic masses in the text box at the bottom of the interface. This list can be copied/pasted in different Avizo modules such as ASVToFSIMSViz or ToFSIMSViz.
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