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Gene Symbol
SPECC1L
Assay Reference Genome
Location

Chr.22:24415265 on build GRCh38
Cytoband
22q11.23
Assay ID Hs02676743_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 23384

Gene Name:

 sperm antigen with calponin homology and coiled-coil domains 1 like

Gene Aliases:

 CYTSA, GBBB2, OBLFC1

Location:

 Chr.22:24270817-24417740 on Build GRCh38

Assay Gene Location:

 Within Exon 19
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPECC1L NM_001145468.3 16 4200 NP_001138940.3
NM_001254732.2 15 4083 NP_001241661.2
NM_001254733.1 9 1739 NP_001241662.1
NM_015330.4 17 4304 NP_056145.4
AB002374.1 13 3529 BAA21574.1
AK025531.1 13 2608
AL832425.1 17 4223 CAH10609.1
AY884293.1 16 4128 AAX84184.1
BC136471.1 16 4070
BM556934.1 1 583
CN334545.1 1 258

Target Gene Details

Entrez Gene ID:

 101730217

Gene Name:

 SPECC1L-ADORA2A readthrough (NMD candidate)

Gene Aliases:

 -

Location:

 Chr.22:24270817-24442360 on Build GRCh38

Assay Gene Location:

 Within Intron 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPECC1L-ADORA2A NR_103546.1
AB209022.1 BAD92259.1
GR939218.1
GR939229.1
GR939241.1
GR939262.1
GR939274.1
GR939286.1
GR939298.1
GR939310.1
GR939322.1
GR939334.1
GR939358.1
GR939370.1
GR939382.1
GR939394.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2724068 Chr.22:24288741 - 24669870 on Build GRCh38 Deletion BCRP3 GUCD1 POM121L10P SPECC1L ADORA2A LRRC75B SPECC1L-ADORA2A UPB1 SNRPD3 GGT1 ADORA2A-AS1
dgv8039n54 Chr.22:23323169 - 24601506 on Build GRCh38 Gain MIF-AS1 LOC101929374 MIF GSTT2B CABIN1 CES5AP1 DERL3 VPREB3 SPECC1L RGL4 ZNF70 SNRPD3 LOC107985559 DDTL SMARCB1 LOC107985555 MMP11 GGT5 GUSBP11 C22orf15 GUCD1 SLC2A11 DRICH1 ADORA2A LRRC75B SPECC1L-ADORA2A POM121L9P DDT ZDHHC8P1 CHCHD10 LOC388882 LOC100652871 GSTTP1 PCAT14 SUSD2 UPB1 IGLL1 GGT1 ADORA2A-AS1 GSTT2
nsv1055830 Chr.22:24005071 - 24643213 on Build GRCh38 Gain CABIN1 GUCD1 SPECC1L ADORA2A LRRC75B SPECC1L-ADORA2A SNRPD3 POM121L9P BCRP3 GSTTP1 SUSD2 GGT5 UPB1 GGT1 ADORA2A-AS1
nsv588744 Chr.22:24285587 - 24617379 on Build GRCh38 Gain GUCD1 SPECC1L ADORA2A LRRC75B SPECC1L-ADORA2A UPB1 SNRPD3 GGT1 ADORA2A-AS1
nsv834160 Chr.22:24329972 - 24507687 on Build GRCh38 Gain SPECC1L ADORA2A SPECC1L-ADORA2A UPB1 ADORA2A-AS1
nsv1057819 Chr.22:24290518 - 24624081 on Build GRCh38 Gain GUCD1 SPECC1L ADORA2A LRRC75B SPECC1L-ADORA2A UPB1 SNRPD3 GGT1 ADORA2A-AS1
nsv526567 Chr.22:23348138 - 24600663 on Build GRCh38 Gain MIF-AS1 LOC101929374 MIF GSTT2B CABIN1 CES5AP1 DERL3 VPREB3 SPECC1L RGL4 ZNF70 SNRPD3 LOC107985559 DDTL SMARCB1 LOC107985555 MMP11 GGT5 GUSBP11 C22orf15 GUCD1 SLC2A11 DRICH1 ADORA2A LRRC75B SPECC1L-ADORA2A POM121L9P DDT ZDHHC8P1 CHCHD10 LOC388882 LOC100652871 GSTTP1 PCAT14 SUSD2 UPB1 IGLL1 GGT1 ADORA2A-AS1 GSTT2
esv2724041 Chr.22:23315914 - 24669376 on Build GRCh38 Deletion MIF-AS1 LOC101929374 MIF GSTT2B CABIN1 CES5AP1 DERL3 POM121L10P VPREB3 SPECC1L RGL4 ZNF70 SNRPD3 LOC107985559 BCRP3 DDTL SMARCB1 LOC107985555 MMP11 GGT5 GUSBP11 C22orf15 GUCD1 SLC2A11 DRICH1 ADORA2A LRRC75B SPECC1L-ADORA2A BCR POM121L9P DDT ZDHHC8P1 CHCHD10 LOC388882 LOC100652871 GSTTP1 PCAT14 SUSD2 UPB1 IGLL1 GGT1 ADORA2A-AS1 GSTT2
esv3893463 Chr.22:24009046 - 24601506 on Build GRCh38 Gain CABIN1 GUCD1 SPECC1L ADORA2A LRRC75B SPECC1L-ADORA2A SNRPD3 POM121L9P SUSD2 GGT5 UPB1 GGT1 ADORA2A-AS1
esv996036 Chr.22:24409618 - 24416770 on Build GRCh38 Deletion SPECC1L SPECC1L-ADORA2A
dgv4528n100 Chr.22:23322244 - 24682765 on Build GRCh38 Gain MIF-AS1 LOC101929374 MIF GSTT2B CABIN1 CES5AP1 DERL3 POM121L10P VPREB3 SPECC1L RGL4 ZNF70 SNRPD3 LOC107985559 BCRP3 DDTL SMARCB1 LOC107985555 MMP11 GGT5 GUSBP11 C22orf15 GUCD1 SLC2A11 DRICH1 ADORA2A LRRC75B SPECC1L-ADORA2A POM121L9P DDT ZDHHC8P1 CHCHD10 LOC388882 LOC100652871 GSTTP1 PCAT14 SUSD2 UPB1 IGLL1 GGT1 ADORA2A-AS1 GSTT2
nsv953061 Chr.22:24410533 - 24427132 on Build GRCh38 Deletion SPECC1L ADORA2A SPECC1L-ADORA2A
esv3575443 Chr.22:23348201 - 24670505 on Build GRCh38 Gain MIF-AS1 LOC101929374 MIF GSTT2B CABIN1 CES5AP1 DERL3 POM121L10P VPREB3 SPECC1L RGL4 ZNF70 SNRPD3 LOC107985559 BCRP3 DDTL SMARCB1 LOC107985555 MMP11 GGT5 GUSBP11 C22orf15 GUCD1 SLC2A11 DRICH1 ADORA2A LRRC75B SPECC1L-ADORA2A POM121L9P DDT ZDHHC8P1 CHCHD10 LOC388882 LOC100652871 GSTTP1 PCAT14 SUSD2 UPB1 IGLL1 GGT1 ADORA2A-AS1 GSTT2

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More Information


Set Membership:

 Intragenic Exonic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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