On this page:

Self-contained, single-use solution

The Thermo Scientific Harvestainer bioprocessing bag (container) is a self-contained, single-use, closed system solution for harvesting and separating cell cultures grown on microcarrier beads. This system helps increase product yields relative to traditional methods and further aids in reducing clean-in-place (CIP), water for injection (WFI), and clean steam requirements. The Harvestainer BPCs, designed for smaller-scale (<12 L) and larger-scale (12–50 L) applications, facilitate equipment maintenance and help to reduce process validations, cycle times, and manual final decanting processes.


Microcarrier harvest solution for consistent workflows

Microcarrier harvests often show variability due to open handling, manual transfers, and inconsistent shear forces, sometimes leading to unpredictable cell recovery, debris carryover, and downstream disruptions. A closed separation system minimizes contamination risk, standardizes flow paths, and enables controlled, reproducible transitions from culture to clarification, supporting predictable, repeatable performance across batches.

 

The Thermo Scientific Harvestainer is a closed, single-use microcarrier harvest solution engineered to deliver consistent, scalable bioprocessing. By integrating contained separation and disposable flow paths, Harvestainer streamlines operations, reduces cleaning and changeover, and supports reliable scale-up from development to CGMP manufacturing.


How does the Harvestainer work?

The figure below illustrates how the Harvestainer enables a streamlined, closed approach to separating cells from microcarriers within a single-use system. By integrating key steps into one controlled workflow, it simplifies harvesting while maintaining process consistency from culture to downstream processing.


Watch animations of Harvestainer in action


Architecture optimized for microcarrier workflows

The Harvestainer BPC is composed of Thermo Scientific CX5-14 film, which is a 5-layer, 14 mil cast film produced in a CGMP facility. The outer layer is a polyester elastomer coextruded with an ethylene vinyl alcohol (EVOH) barrier layer and a low-density polyethylene product contact layer.
 

Inner microbarrier chamber

The microbarrier chamber creates a protected retention zone that traps microcarrier beads while allowing clarified supernatant to flow out. Its internal barrier geometry slows and redirects flow, helping prevent bead escape and minimizing shear, so beads remain contained during separation for consistent harvests.
 

Flow and drainage pathway

Tubing, dip‑tube placement, and drainage geometry are optimized to guide flow and separate beads from supernatant. Correct dip‑tube depth and angled drainage minimize bead carryover, while preconfigured tubing enables efficient recovery with minimal operator manipulation.
 

Structural configuration

Chamber format provides structural stability; closed containment preserves sterility and helps prevents spills; integrated supports, ports, and connectors enable secure handling and broad process compatibility, maintaining consistent performance from development to CGMP.


Use the Harvestainer across bioprocessing workflows

The system sits at the microcarrier harvest step between culture and primary clarification, replacing open transfer/settling with closed, contained separation. It interfaces with upstream bags and downstream filters.

Small-scale microcarrier harvesting

3 L and 12 L formats suit early development and low‑volume separation. 3 L is ideal for small‑batch optimization, media screening, and method development. 12 L is designed for pilot runs, scale‑down modeling, and higher‑throughput studies.

Large-scale microcarrier separation

25 L and dual‑chamber 50 L configurations suit higher‑volume bead cultures, providing increased capacity, sustained bead retention, and efficient supernatant recovery. Closed, single‑use operation and standardized flow paths support reliable performance at pilot and GMP production scales.

Design your single-use fluid transfer assembly—faster and with confidence


Our Single-Use Assembly Configurator Tool makes it easy to create custom assemblies tailored to your process or select in-stock, ready-to-ship options to help reduce lead times. 

Explore related bioprocessing bags and containers

Upstream, downstream, and storage are covered with single‑use containers: media/transfer bags, hold/transfer bags, and sterile storage bags with robust films and standard connectors—matched to workflows.
Visit our Bioprocessing Bags page for details.

Labtainers

Small‑volume operations need simple, reliable containment. Thermo Scientific 2D Labtainers provide flexible, closed handling with validated porting and integrated tubing, supporting secure storage, sampling, prep, and transfer for low‑volume workflows in early development.

Productainers

Complex or large‑volume processes demand robust, scalable containment. Thermo Scientific Productainers offer durable 3D bag solutions for reliable storage, mixing, and transfer, maintaining closed, sterile operations with validated porting and integrated fluid assemblies.

Powdertainer

Powder transfer can create dust, exposure, and contamination risks. Thermo Scientific Powdertainer enables closed, dust‑free handling with validated connections and integrated assemblies, reducing spills, airborne particulates, and operator contact during material transfers.


Related fluid management solutions

Complementary solutions—validated connectors, tubing, aseptic transfer sets, and compatible rigid containers—work with single‑use bags to maintain sterility end‑to‑end.

Explore our fluid management page for details.

Integrate with bioprocessing films

High‑performance multilayer films provide mechanical strength and puncture/tear resistance for durable handling. Chemically resistant contact layers help ensure compatibility with media, buffers, and cleaning agents. Low‑extractables, gamma‑stable materials maintain sterility and integrity. Controlled gas/moisture transmission supports product stability, while consistent weldability and robust seals enable reliable connections across bags, tubing, and manifolds, offering repeatable performance from development to GMP operations.

Enable secure fluid movement with transfer solutions

Tailored, single-use assemblies integrate bags, tubing, connectors, filters, and sensors to match your process map. Options include sterile weld/snap connections, aseptic sampling, venting, pressure/flow monitoring, and batch tracing. Solutions are prototyped, tested for compatibility and integrity, then scaled with controlled materials and GMP documentation, reducing risk, changeover time, and variability while accelerating tech transfer and commercialization.

 


Frequently asked questions

Select a Harvestainer by matching culture and bead volumes to chamber capacity, ensuring adequate headspace for flow control, approximately 10%. Consider expected cell density and supernatant volume to avoid bead carryover and maintain separation efficiency. Align dip‑tube length and drainage geometry with vessel dimensions. Verify available pump, clamp, and connector compatibility, and choose single‑ or dual‑chamber formats to meet throughput and turnaround needs.

Separation efficiency scales with bead load, settling behavior, and system configuration. Higher bead volumes increase viscosity and shear sensitivity, affecting retention and carryover. Settling kinetics depend on bead size, density, and cell attachment. Configuration—microbarrier design, dip‑tube depth, flow rate, and drainage geometry—controls residence time and turbulence. Closed, standardized pathways and properly sized chambers maintain predictable supernatant recovery and reproducibility.

The closed-system design helps prevents environmental exposure and cross-contamination, preserving cell and supernatant purity. Contained pathways and sterile connectors protect operator safety by minimizing spills and aerosols. Standardized flow paths, controlled dip‑tube placement, and engineered drainage geometry reduce variability in shear and residence time, enabling consistent bead retention and predictable, repeatable recovery across batches and scales while streamlining transfers to downstream clarification or filtration.

Harvestainer systems connect to bioreactors, pumps, and collection drums via standardized sterile connectors, weldable tubing, and dip‑tube interfaces. Configurable line lengths and port options fit common hardware footprints. Single‑use, closed operation simplifies cleaning validation. Supplier packages typically include material specs, extractables/leachables, gamma and integrity data, and lot traceability—supporting risk assessments, IQ/OQ documentation, and streamlined qualification within existing GMP workflows.

Dip‑tube geometry sets depth and angle to minimize bead entrainment and control residence time. Chamber shape directs laminar flow and creates a retention zone for beads, improving separation and clarified supernatant recovery. Containment hardware—rigid frames, secure ports, and standardized connectors—stabilizes the system, maintains closed pathways, and helps prevent leaks or turbulence, enabling consistent drainage rates, predictable flow profiles, and repeatable performance across scales.

Teams should assess culture volume and target throughput, current and future process scale, bead type/size and settling behavior, required purity and yield, and compatibility with bioreactors, pumps, and collection vessels. Consider facility layout, available floor space, and operator ergonomics. Evaluate closed‑system requirements, single‑use vs. reusable components, documentation needs, and team bandwidth for setup, changeover, and validation to help ensure consistent, scalable performance.

Explore bioprocessing insights


The Bioprocessing Insights Hub by Thermo Fisher Scientific is designed for biomanufacturing professionals, offering educational resources to optimize single-use bioprocessing workflows. It features articles, guides, and case studies on topics such as assembly design, contamination mitigation, and technology transfer. Resources include application notes, brochures, white papers, videos, and webinars, covering areas like process optimization, scalability, quality, and sustainability.

For research use or further manufacturing. Not for diagnostic use or direct administration into humans or animals.