Top 8 Tips for Performing Antimicrobial Susceptibility Testing with Gram-Positive Organisms

According to the World Health Organization’s (WHO) 2024 Bacterial Priority Pathogen List, the Gram-positive pathogens of greatest concern due to antimicrobial resistance (AMR) include methicillin-resistant Staphylococcus aureus (MRSA) and vancomycin-resistant Enterococcus faecium (VRE), both classified as high-priority threats. This designation reflects their substantial global burden, increasing resistance trends, and the limited availability of effective treatment options.

Top 8 tips:

  1. Test for cefoxitin and/or oxacillin to detect methicillin resistance in Staphylococcus aureus (MRSA).  
  2. Perform a D-test with clindamycin and erythromycin to detect inducible clindamycin resistance. 
  3. Test for vancomycin using the broth microdilution method to obtain minimum inhibitory concentration (MIC) values for Staphylococcus spp., enabling determination of resistance levels
  4. Differentiate Enterococcus spp. vanA vs. vanB phenotypes by testing both vancomycin and teicoplanin.   
  5. Assess high level aminoglycoside resistance by testing high concentration of gentamicin or streptomycin. 
  6. Refer to EUCAST and CLSI guidelines for current intrinsic resistance patterns and reporting recommendations. 
  7. Consider the clinical context when selecting the appropriate antimicrobial susceptibility tests. 
  8. Ensure appropriate quality control procedures are followed to guarantee reliable results. 

Key resistance mechanisms requiring special consideration

Staphylococcus spp.

 

  • mecA/mecC genes → confers methicillin resistance (MRSA):

 

Cefoxitin test is the recommended primary phenotypic screen, this can be performed either by disk diffusion or another susceptibility testing method available on the market.

 

MIC determination with oxacillin can also be used. Oxacillin disks are less reliable due to heterogeneous expression methicillin resistance mediated by the mecA or mecC gene.

 

  • Inducible clindamycin resistance should be confirmed using the D-test, which involves testing erythromycin and clindamycin separately and together to detect inducible resistance.

 

  • Vancomycin resistance in S. aureus includes VRSA (vancomycin resistant S. aureus), VISA (vancomycin intermediate S. aureus), and hVISA (heterogeneous vancomycin intermediate S. aureus). VRSA resistance is mediated by the vanA gene, whereas VISA and hVISA exhibit more complex resistance mechanisms involving various chromosomal mutations. Broth microdilution is the recommended method for accurate detection.

 

 

Enterococcus spp.

 

  • vanA/vanB genes → confers vancomycin resistance (VRE)Clinically significant resistance is most often mediated by plasmid-encoded ligases. These enzymes replace the terminal D-Ala in the peptidoglycan precursor with D-Lac, thereby reducing glycopeptide binding and conferring vancomycin resistance.
    • VanA-producing strains: Show resistance to both vancomycin and teicoplanin.
    • VanB-producing strains: Typically remain susceptible to teicoplanin because the resistance operon is not induced by this agent. However, some heterogenous expression of teicoplanin resistance can be encountered.

 

It is important to confirm that the isolate is not E. gallinarum or E. casseliflavus, which intrinsically carry chromosomal enzymes that mediate low-level vancomycin resistance and are generally not considered significant from an infection-control perspective.

 

  • High-level aminoglycoside resistance (HLAR) → limits the effectiveness of synergistic therapy with cell wall–active agents. Detection requires testing high concentrations of aminoglycosides, typically gentamicin or streptomycin, to determine whether synergistic activity is still achievable.

 


Intrinsic resistance patterns

Avoid reporting antibiotics that are intrinsically ineffective for the organism. Examples include:

  • Enterococcus spp.→ resistant to cephalosporins, trimethoprim–sulfamethoxazole, low-level aminoglycosides

  • Staphylococcus spp. → naturally resistant to nalidixic acid due to poor drug affinity for the bacterial DNA gyrase. This is why nalidixic acid is not used clinically against staphylococci.

  • Some Staphylococcus spp. possess intrinsic mutations or absent fosfomycin transporters, limiting drug entry. This contributes to variable intrinsic fosfomycin susceptibility across the genus.

Always consult the EUCAST or CLSI guidelines when establishing your reporting rules. Suppress results for agents that are intrinsically inactive - even if the testing system generates a zone or MIC value. Recognizing intrinsic resistance is essential to prevent inappropriate or ineffective therapy.

 

 


Importance of testing infection-specific agents

Different clinical syndromes require specific antimicrobial agents, which is why AST panels should be selected based on the clinical context to ensure relevant and meaningful results.

 

  • Endocarditis: For viridans streptococci and enterococci, determine penicillin or ampicillin MICs. Current guidelines strongly recommend MIC testing in suspected or confirmed endocarditis because high-dose β-lactam therapy is commonly used, and the effectiveness of aminoglycoside synergy depends on accurate MIC values.

  • Skin and soft tissue infections: Include agents active against MRSA when clinically appropriate (e.g., tetracyclines, trimethoprim–sulfamethoxazole, linezolid). When erythromycin resistance and clindamycin susceptibility are observed, performing a D-test is recommended to rule out inducible clindamycin resistance before reporting clindamycin as susceptible.


Ensure quality control and reproducibility

Accurate AST results depend on adherence to validated quality control procedures:

  • Perform routine quality control (daily or weekly, as required) using appropriate reference strains such as ATCC strains, including strains with specific resistance mechanisms.

  • Ensure all testing conditions are correctly maintained, including incubation parameters, medium selection, atmosphere, and inoculum preparation.

  • Interpret susceptibility results at the correct time point - reading too early or too late can lead to misclassification.

  • Verify unexpected or atypical results using alternative methods to confirm accuracy and rule out technical error.

Quality control failures are one of the most common causes of inaccurate susceptibility results.

 


Learn more about Thermo Scientific Sensititre solutions for AST in our Sensititre Plate Guide Booklet. For appropriate QC strain selection see our options at QC for AST page.

References

 

  1. EUCAST guidelines for detection of resistance mechanisms and specific resistances of clinical and/or epidemiological importance. Version 2.01, July 2017. Christian G. Giske et al.

  2. WHO Bacterial Priority Pathogens List, 2024: bacterial pathogens of public health importance to guide research, development and strategies to prevent and control antimicrobial resistance. Geneva: World Health Organization; 2024. Licence: CC BY-NC-SA 3.0 IGO.

  3. The European Committee on Antimicrobial Susceptibility Testing. Breakpoint tables for interpretation of MICs and zone diameters. Version 15.0, 2025. https://www.eucast.org.

  4. CLSI. Performance Standards for Antimicrobial Susceptibility Testing. 35th ed. CLSI supplement M100. Clinical and Laboratory Standards Institute; 2025. 

  5. Park IJ, Lee WG, Shin JH, Lee KW, Woo GJ. 2008. VanB Phenotype-vanA Genotype Enterococcus faecium with Heterogeneous Expression of Teicoplanin Resistance. J Clin Microbiol 46:. https://doi.org/10.1128/jcm.00712-08