How can I set up auto-analysis for data in GeneMapper with the 3500 Data Collection Software version 3.x?
Beginning with 3500 Data Collection Software version 3, the 3500 Data Collection Software does not support automatic secondary analysis. This is also indicated in the software release notes. To perform secondary data analysis, you will need to manually import the .fsa file into the GeneMapper software. For optimal performance, we recommend that you install the GeneMapper Software on a stand-alone computer that is not part of the 3500 Genetic Analyzer system.
Find additional tips, troubleshooting help, and resources within our Fragment Analysis Software Support Center.
Can I purchase a computer from you or someone else and install the Applied Biosystems 3500/3500xL Genetic Analyzer software myself?
You can purchase a computer for installation of the secondary analysis software packages (e.g., Sequencing Analysis, GeneMappersoftware) as long as the computer meets the software compute requirements (for processor speed, the minimum speed of the processor should be at least 3 GHz) and you can install the software yourself.
For the instrument computer, the computer system has a much more stringent requirement and undergoes thorough testing to make sure it can handle the flow of data from the instrument to the computer. The images for the computer system are streamlined to make sure they have the proper drivers for the computer components, and the Operating System is optimized to make sure there is nothing running in the background that might slow the computer down, take up memory, or conflict with our software. Purchasing a computer commercially can introduce too many variables in terms of hardware and software that can negatively affect the data collection process so we cannot support connecting it to the instrument.
Find additional tips, troubleshooting help, and resources within our Capillary Electrophoresis Instruments Support Center.
Can I re-install the Applied Biosystems 3500/3500xL Genetic Analyzer Data Collection Software myself?
Installation of the Data Collection Software for the Applied Biosystems 3500/3500xL Genetic Analyzer Data Collection Software is a complex process that requires a Field Service Engineer to install the software properly.
Find additional tips, troubleshooting help, and resources within our Capillary Electrophoresis Instruments Support Center.
What is the white residue around the Applied Biosystems 3500/3500xL Genetic Analyzer array knob?
When placing the array on the instrument, the last step in the process is to loosen the array knob and the instrument forces any air bubbles around the array tip through the threading and the middle of the array knob. Some polymer gets pushed through as well and when it dries up, it appears as a white, flaky residue. Use a damp, lint-free cloth to remove it.
Find additional tips, troubleshooting help, and resources within our Capillary Electrophoresis Instruments Support Center.
My array is stuck in the pump on my Applied Biosystems 3500/3500xL Genetic Analyzer, even after loosening the knob. What can I do?
If the array is stuck in the pump, even after loosening the knob, squirt around the edge of the array head with distilled water and try to remove it again. If the array will not move, a service call may be required. Do not use excessive force or tools to try and remove it.
Find additional tips, troubleshooting help, and resources within our Capillary Electrophoresis Instruments Support Center.