900767 - FAQs

Which probe array types are supported in GTC 4.2?

Genotyping analysis:

-GeneChip Human Mapping 100K Set
-GeneChip Human Mapping 500K Array Set
-Affymetrix Genome-Wide Human SNP Array 5.0
-Affymetrix Genome-Wide Human SNP Array 6.0

Copy number/copy nmber segments/LOH analysis:
-GeneChip Human Mapping 100K Set
-GeneChip Human Mapping 500K Array Set
-Affymetrix Genome-Wide Human SNP Array 6.0

Copy number variation analysis:
-Affymetrix Genome-Wide Human SNP Array 6.0

The GeneChip Human Mapping 10K Array platform is not supported by GTC 3.0.1. The SNP Array 5.0 platform can be used with Partek for copy number analysis.

Find additional tips, troubleshooting help, and resources within our Microarray Analysis Support Center.