The Click-iT EdU Cell Proliferation Assay for Microplates protocol requires samples to be fixed and permeabilized prior to the click reaction. Most endogenous peroxidases may be inactivated after fixation/permeabilization and after the click reaction. If this is of concern, apply the Amplex UltraRed reaction mixture without added H2O2 to the samples after fixation, but before the click reaction (i.e., no HRP-azide added to the sample). In the absence of added H2O2 and HRP-azide, if you see any change in Amplex UltraRed fluorescence intensity, this is indicative of endogenous peroxidase activity.
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