Arcturus™ Paradise™ PLUS QC Kit
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Applied Biosystems™

Arcturus™ Paradise™ PLUS QC Kit

Formalin-fixed paraffin-embedded (FFPE) samples introduce unique challenges for gene expression profiling and gene expression quantitation, including chemical modification and fragmentationRead more
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Catalog NumberQuantity
KIT030348 Samples
KIT031312 Samples
Catalog number KIT0303
Price (CNY)
-
Quantity:
48 Samples
Formalin-fixed paraffin-embedded (FFPE) samples introduce unique challenges for gene expression profiling and gene expression quantitation, including chemical modification and fragmentation of RNA molecules. Archival FFPE samples present additional challenges due to increased RNA degradation over time. As a result, not all FFPE samples contain high quality RNA.

The ARCTURUS™ Paradise™ PLUS Sample Quality Assessment Kit offers a simple solution for evaluating the quality of RNA from Formalin-Fixed Paraffin-Embedded (FFPE) tissues before proceeding with laser microdissection and downstream molecular analysis. The reagents provided in the kit are optimized to enable efficient extraction, isolation, and reverse transcription of total RNA from FFPE tissue scrapes. The RNA quantity and quality is then measured using quantitative real-time PCR (Figure 1).

The RNA quantity and quality are assessed by the presence of intact RNA for a specific message. Two sets of β-actin gene-specific primers designed to amplify short segments of DNA within the β-actin target sequence are used to estimate the amount of RNA in a given sample in relation to β-actin content using the real-time PCR technique. The RNA quantity derived from the 3' primer set is used to quantitate the RNA in the FFPE tissue scrape. The ratio of the RNA yield obtained from both sets of PCR primers is the 3'⁄5' ratio and is used as an indication of RNA quality.

Key product features:
• Secure Downstream Success with the Paradise™ QC Kit
• Benefit from the Only Complete System for Formalin-fixed Samples

Benefit from the Only Complete System for Formalin-fixed Samples
The Paradise™ PLUS Reagent System is the only available solution that provides all the components necessary to prepare RNA from FFPE tissue samples for gene expression analysis. To ensure successful microarray results, the system includes reagents optimized for exceptional recovery of RNA and superior RNA amplification.

Integrated Systems for Microgenomics
The Paradise™ PLUS Reagent System is validated as part of the ARCTURUS™ Complete System for Microgenomics™, an integrated solution for utilizing small quantities of RNA for gene expression analysis, and features the ARCTURUSXT™ Laser Capture Microdissection (LCM) Instrument to procure pure cell populations. Arcturus' Systems for Microgenomics enable accurate and sensitive microarray assays that reveal molecular otherwise obscured in whole tissue samples or cell mixtures.

For Research Use Only. Not for use in diagnostics procedures.
For Research Use Only. Not for use in diagnostic procedures.
Specifications
For Use With (Application)Real-Time Quantitative PCR (qPCR)
For Use With (Equipment)ArcturusXT™ LCM Instrument
IncludescDNA Synthesis Kit, RNA Isolation Kit (RNA Extraction and Purification Reagents, Purification Columns)
Product LineARCTURUS, Paradise
Quantity48 Samples
Sample TypeTissue (FFPE)
TypePLUS QC Kit
Workflow StepReverse Transcription, RNA Extraction, Sample QC, RNA Amplification
Unit Size48 samples
Contents & Storage
RNA Isolation kit (RNA extraction and purification reagents, purification columns), cDNA synthesis kit. Variable storage conditions.

Frequently asked questions (FAQs)

What is the typical size range of amplified RNA?

A single round of amplification yields product sizes ranging from 200 bases to 6 kb. The majority of these products are approximately 1.5 kb in length. A second round of amplification will result in shorter products. We recommend using an Agilent 2100 bioanalyzer to visualize these products. Amplification products can be visualized by agarose gel electrophoresis; they will migrate as a smear. Although this data is still useful, it is less informative than bioanalyzer analysis.

Find additional tips, troubleshooting help, and resources within our Epigenetics Support Center.

Why is RNA amplification necessary?

Glass microarray analysis experiments typically require 5-20 µg of total RNA per slide for sample labeling and hybridization. Thus, microarray-based gene expression analysis of very small samples [laser capture microdissection (LCM), tissue biopsies, or other clinical samples] is difficult due to the very low amounts of total RNA recovered from the samples. Linear amplification of RNA from small samples produces sufficient quantities of RNA for sample labeling and hybridization. Since the amplification technique is highly reproducible and maintains representation of the gene expression in the original sample, it is recommended for probe synthesis by most manufacturers of commercially available microarrays.

Find additional tips, troubleshooting help, and resources within our Epigenetics Support Center.

How do I locate the overview image on the Arcturus XT LCM Instrument?

First, optimize the visualization of the image in the live video at 2X by increasing or decreasing the brightness setting, then right-click on the overview image and select "remember settings". This resets your optimized image settings, and when you select "re-acquire overview image" you will now generate a perfectly exposed overview image.

With the ArcturusXT LCM Instrument, which laser should I use to isolate my region of interest? UV cutting laser or IR capture laser?

For a few cells: The gentle IR-only approach is the best recommendation for preserving nucleic acids and verifying that the desired material is collected on the cap. For groups of cells or large tumor regions: Mount your tissue on a membrane slide and take advantage of the power of the IR, or IR + UV cutting laser to cut around your region of interest quickly and cleanly.

What is Arcturus Laser Capture Microdissection (LCM)?

The ArcturusXT LCM Instrument has a proprietary combination of a gentle IR laser and a powerful UV laser that work in conjunction to efficiently isolate cells from frozen sections or paraffin embedded sections without changing morphology or integrity of the biological content. The IR laser helps to capture the cells of interest, and the UV laser microdissects the captured cells. This is done without affecting the morphology of the cells, and allows for visual inspection of the remaining specimen to help ensure the quality of the sample collected. In addition to the flexibility that the dual laser system provides, there is the flexibility of multiple stage inserts for various sample types. A wide-slide stage format is available for neurobiology researchers working with very large sections of brain tissue. The petri dish stage insert enables live-cell microdissection applications such as stem cell research and other rare-cell isolations.