Yes, you may use SYPRO Orange Protein Gel Stain with Invitrogen gels but the protocol would have to be modified. The stain is mainly to be used with 0.05% SDS running buffer while all our buffers contain 0.1% SDS. This results in high background as the SDS binds tightly to the stain. The following protocol is recommended for best results with Invitrogen gels:
Wash solution: 7.5% (v/v) Acetic acid
Staining solution: 1:5000 SYPRO Orange in Wash solution
After the gel run is over, wash the gel in 100 ml of Wash solution for 10 minutes.
Place gel in Staining solution for up to 24 h in the dark.
Remove the gel from the Staining solution and rinse briefly in 100 ml Wash solution.
The gel is then ready to be photographed.
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Protein Assays and Analysis Support Center.