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          • › C__30090620_10
          See other FTO GT Assays ›
          SNP ID:
          rs9939609
          Gene
          FTO
          Gene Name
          fat mass and obesity associated
          Set Membership:
          > HapMap
          Chromosome Location:
          Chr.16: 53786615 - 53786615 on Build GRCh38
          Polymorphism:
          A/T, Transversion substitution
          Context Sequence [VIC/FAM]:

          GGTTCCTTGCGACTGCTGTGAATTT[A/T]GTGATGCACTTGGATAGTCTCTGTT

          Assay ID C__30090620_10
          Size
          Availability Made To Order
          Catalog # 4351379
          Price
          Your Price
          Online offer:
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details



          Species:

          Human

          dbSNP Submissions:

          NA

          Phenotype:

          MIM: 610966

          Literature Links:

          FTO PubMed Links

          Allele Nomenclature:

          Minor Allele Frequency:

          1000Genome Applied Biosystems® HapMap
          Global
          A (0.34)
          (0.66)
          Caucasian - Not Available CEPH (CEU)
          A (0.46)
          (0.54)
          EAS
          A (0.17)
          (0.83)
          African American - Not Available YRI (Yoruba)
          T (0.49)
          (0.51)
          SAS
          A (0.29)
          (0.71)
          Chinese - Not Available JPT (Japanese)
          T (0.19)
          (0.81)
          AFR
          T (0.49)
          (0.51)
          Japanese - Not Available CHB (Han Chinese)
          A (0.12)
          (0.88)
          EUR
          T (0.41)
          (0.59)
          AMR
          A (0.26)
          (0.74)
          FTO - fat mass and obesity associated
          Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
          NM_001080432.2 Intron NP_001073901.1
          XM_011523313.2 Intron XP_011521615.1
          XM_011523314.2 Intron XP_011521616.1
          XM_011523315.2 Intron XP_011521617.1
          XM_011523316.2 Intron XP_011521618.1
          XM_017023654.1 Intron XP_016879143.1
          XM_017023655.1 Intron XP_016879144.1
          XM_017023656.1 Intron XP_016879145.1
          XM_017023657.1 Intron XP_016879146.1
          XM_017023658.1 Intron XP_016879147.1

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          More Information


          Set Membership:

          HapMap

          Panther Classification:

          Molecular Function -

          oxygenase

          Gene Ontology Categories:

          Function(s) Process(es)

          temperature homeostasis
          DNA dealkylation involved in DNA repair
          regulation of lipid storage
          oxidative single-stranded DNA demethylation
          oxidative single-stranded RNA demethylation
          regulation of multicellular organism growth
          RNA repair
          regulation of respiratory system process
          adipose tissue development
          regulation of white fat cell proliferation
          oxidative demethylation
          DNA demethylation
          regulation of brown fat cell differentiation
          ferrous iron binding
          oxidative RNA demethylase activity
          oxidative DNA demethylase activity
          DNA-N1-methyladenine dioxygenase activity
          RNA N6-methyladenosine dioxygenase activity

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