Assay Details

Gene Symbol: Scn1a
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_030875.1	NP_110502.1	18 - 19	3806		64
	XM_008761923.1	XP_008760145.1	18 - 19	3826		64
	XM_008761924.1	XP_008760146.1	18 - 19	3734		64
	XM_008761925.1	XP_008760147.1	18 - 19	3642		64
	XM_008761926.1	XP_008760148.1	18 - 19	3825		64
	XM_008761927.1	XP_008760149.1	18 - 19	3792		64
	XM_008761928.1	XP_008760150.1	18 - 19	3790		64
	XM_008761929.1	XP_008760151.1	18 - 19	3825		64
GenBank mRNA	FQ212107.1	-	2 - 3	269		64
	M22253.1	-	18 - 19	3806		64
	X03638.1	-	18 - 19	3806		64

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300003229.rn.1

Set Membership:

Ambion siRNA available

Amplicon length less than or equal to 70

Ion Channel

Recommended Assay

Rattus norvegicus

1700

Inventoried

Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Scn1a

Panther Classification:

Molecular Function -

voltage-gated ion channel

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P099011	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	941926	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	431363	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	10576	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	138812	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	658302	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	574697	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	337834	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	636366	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	657850	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	320721	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	614697	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	501991	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	355087	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	428503	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	795342	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	128932	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	708079	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	371724	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	385159	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	230278	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	957375	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	806009	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	965861	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	521181	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	130925	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	203590	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	525267	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	931965	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	61575	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	638130	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	183787	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	108452	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	611077	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	627845	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	146422	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	44045	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	116928	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	166876	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	41863	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	112170	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	16570	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	68648	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	84791	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P099011	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P099011	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P099011	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P508442	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	13820	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	30453	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	28444	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10845887	-	-
Affymetrix Rat Gene 1.0 ST Array	10845860	-	-
Affymetrix Rat Gene 1.0 ST Array	10845878	-	-
Affymetrix Rat Gene 1.0 ST Array	10845876	-	-
Affymetrix Rat Gene 1.0 ST Array	10845861	-	-
Affymetrix Rat Gene 1.0 ST Array	10845884	-	-
Affymetrix Rat Gene 1.0 ST Array	10845879	-	-
Affymetrix Rat Gene 1.0 ST Array	10845875	-	-
Affymetrix Rat Gene 1.0 ST Array	10845871	-	-
Affymetrix Rat Gene 1.0 ST Array	10845883	-	-
Affymetrix Rat Gene 1.0 ST Array	10845874	-	-
Affymetrix Rat Gene 1.0 ST Array	10845864	-	-
Affymetrix Rat Gene 1.0 ST Array	10845873	-	-
Affymetrix Rat Gene 1.0 ST Array	10845868	-	-
Affymetrix Rat Gene 1.0 ST Array	10845867	-	-
Affymetrix Rat Gene 1.0 ST Array	10845877	-	-
Affymetrix Rat Gene 1.0 ST Array	10845862	-	-
Affymetrix Rat Gene 1.0 ST Array	10845869	-	-
Affymetrix Rat Gene 1.0 ST Array	10845863	-	-
Affymetrix Rat Gene 1.0 ST Array	10845865	-	-
Affymetrix Rat Gene 1.0 ST Array	10845885	-	-
Affymetrix Rat Gene 1.0 ST Array	10845880	-	-
Affymetrix Rat Gene 1.0 ST Array	10845872	-	-
Affymetrix Rat Gene 1.0 ST Array	10845881	-	-
Affymetrix Rat Gene 1.0 ST Array	10845882	-	-
Affymetrix Rat Gene 1.0 ST Array	10845886	-	-
Affymetrix Rat Gene 1.0 ST Array	10845870	-	-
Affymetrix Rat Gene 1.0 ST Array	10845889	-	-
Affymetrix Rat Gene 1.0 ST Array	10845888	-	-
Affymetrix Rat Gene 1.0 ST Array	10845866	-	-
Affymetrix Rat Gene 1.1 ST Array	10845859	-	-
Rat Genome 230 2.0 Array	1369210_PM_at	-	-
Rat Genome 230 2.0 Array	1369210_at	-	-
Affymetrix HT Rat Focus Array	1369210_at	-	-
Affymetrix HT Rat Focus Array	1369210_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300025071.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025087.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025081.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025098.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025090.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025075.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025070.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025069.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025089.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025083.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025091.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025068.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025093.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025073.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025072.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025079.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025082.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025084.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025076.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025080.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025066.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025078.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025077.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025101.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025085.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025092.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025088.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025097.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025096.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025074.rn.1	TC0300003229.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300025086.rn.1	TC0300003229.rn.1	RTA TC
Rat Expression Set 230	1369210_PM_at	-	-
Rat Expression Set 230	1369210_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10845859	-	-
Rat Genome U34 Set	M22253_at	-	-
Rat Genome U34 Set	M22253_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21750820	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1358434	-	-
RatRef-12 Expression BeadChip	ILMN_56183	-	-

Availability	Inventoried
Catalog #	4331182
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Genomic Map