How much volume of the Platinum SuperFi II PCR Master Mix (2X) or Platinum SuperFi II PCR Green Master Mix (2X) should I use per reaction?
Typically, for a 50 µL PCR reaction, we recommend using 25µµL of the 2X master mix so that its final concentration in the reaction is 1X.
Find additional tips, troubleshooting help, and resources within our PCR and cDNA Synthesis Support Center.
What is the best way to quantify your PCR samples using the Platinum SuperFi II PCR Master Mix, Green (Cat, No. 12369250, 12369010, 12369050)? Is it possible to quantify using Tapestation or a Qubit fluorometer?
The dyes in the Platinum SuperFi II Green PCR Master Mix can interfere with the fluorescent readings on both Qubit fluorometer and Tapestation. To accurately quantify your samples, you should first use a PCR purification kit, such as the GeneJet PCR Purification Kit (Cat. No. K0701), to clean up your samples. Alternatively, you can use the Platinum SuperFi II PCR Master Mix (Cat. No. 12368010) which does not contain the interfering dyes, thus eliminating the need for a purification step.
Find additional tips, troubleshooting help, and resources within our PCR and cDNA Synthesis Support Center.
What are your recommendations when working with long amplicons using Platinum SuperFi II DNA Polymerase?
Good lab practices are important for long fragment amplification. These include using high-quality templates (pure, fresh, and intact) and fresh primer solutions. Reducing primer concentration to 0.2 µM may also improve the results.
Can I use Platinum SuperFi DNA Polymerase cycling protocol and primer annealing temperature with Platinum SuperFi II DNA Polymerase?
Yes, Platinum SuperFi II DNA Polymerase works at both universal 60 degrees C annealing temperature and at annealing temperatures calculated with a Tm calculator.
Can I perform TA cloning with Platinum SuperFi II DNA Polymerase?
Platinum SuperFi II DNA Polymerase produces blunt-ended PCR products that can be cloned directly into blunt-ended cloning vectors. TA cloning is also possible if 3' dA-overhangs are added after PCR. We recommend purifying the PCR products of Platinum SuperFi DNA Polymerase before adding the overhangs. The procedure for adding 3' dA-overhangs (TA cloning) includes the following steps:
- Purify the PCR product (e.g., with a PCR purification kit or phenol extraction/DNA precipitation). Before adding the overhangs, PCR product must be purified, as the strong proofreading activity of any remaining Platinum SuperFi DNA Polymerase will degrade the added 3' dA-overhangs.
- Perform 3' dA addition with a Taq DNA polymerase.
Reaction components:
Purified PCR product
0.2 mM dATP
1x Taq Buffer
1 U Taq DNA Polymerase
Incubate the reaction for 20 min at 72 degrees C.
- Proceed to TA cloning. For optimal ligation efficiency, we recommend using fresh PCR products, since 3' dA-overhangs can be lost during storage